According to interviews conducted with then-Marvel editor-in-chief , every story prior to this story remains this would later be contradicted as the events of later stories imply MJ never fell pregnant.
Peter and MJ stayed as friends hoping to be able to re-light the fire, they once had for each other.
Marvel Rising MJ in Marvel Rising Mary Jane appears in the Marvel Rising animated projects Marvel Rising: Initiation, Marvel Marvel Rising: Chasing Ghosts, Marvel Rising: Battle of the Bands and Marvel Rising: Operation Shuri, with Tara Strong reprising her role.
The next morning, Mary Jane is seen and is somehow mad at Peter at something and soon left the place.
Mary Jane is reunited with Patient Zero, but is left distraught when Punisher kills him.
Eventually MJ would turn in the real culprit who was her father, Philip.